Illumina amplicon sequencing of metagenomic paired-end library 'Solex... - SRA

SRX1058005: Illumina amplicon sequencing of metagenomic paired-end library 'Solexa-171921' containing sample 'SKSTL0010'
1 ILLUMINA (Illumina MiSeq) run: 272,473 spots, 95.4M bases, 61.1Mb downloads

UUID: 4e53c52d-d89c-4465-910b-00d5c102c6a1

Design: Illumina sequencing of unclassified sequences via polymerase chain reaction

Submitted by: Broad Institute (BI)

Study: Microbiome study of the RISK cohort

PRJNA237362 • SRP040765 • All experiments • All runs

show Abstracthide Abstract

Risk Stratification and Identification of Immunogenetic and Microbial Markers of Rapid Disease Progression in Children with Crohn’s Disease.

Sample: Generic sample from unclassified sequences

SAMN03771666 • SRS960429 • All experiments • All runs

Organism: unclassified sequences

Library:

Name: Solexa-171921

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: PAIRED

Spot descriptor:

1 forward176 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithoutReference

data_type: 16S

gssr_id: 356933.0

library_type: 16S

lsid: broadinstitute.org:bsp.prod.sample:4KJEX

material_type: DNA:DNA Genomic

product_order: PDO-1569

product_part_number: P-MCV-0002

project: G40571

research_project: RP-105

root_sample_id: SM-44743

sample_id: SM-4KJEX

work_request: 36965

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-07-18 16:44:42.0	GAPipeline	RTA1.17.28	Sequencer Application 2.2.0

Runs: 1 run, 272,473 spots, 95.4M bases, 61.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR2062022	272,473	95.4M	61.1Mb	2015-06-12

ID:: 1535014

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Sequence Read Archive

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